Macdonald Lab
Genetics & Genomics
Click on links to download a PDF of the paper or a zipped directory of the Data, or open a new window to the Journal, the Supporting Info on the journal's website, the paper's abstract on PubMed, or any related Sequences deposited in GenBank.
Lab PubMed link
2007
Macdonald SJ
Intermediate-throughput laboratory-scale genotyping solutions
Ch. 10, pp. 155-69 in Genetic Variation: A Laboratory Manual
Edited by M. P. Weiner, J. C. Stephens, and S. Gabriel
Cold Spring Harbor Laboratory Press, New York
Book chapter
Website
Cuppen E, Macdonald SJ, Ha C, Kwok PY, Barbazuk WB, Hsia AP, Chen HD, Fu Y, Ohtsu K, Schnable PS
Intermediate-throughput laboratory-scale genotyping protocols
Ch. 11, pp. 171-97 in Genetic Variation: A Laboratory Manual
Edited by M. P. Weiner, J. C. Stephens, and S. Gabriel
Cold Spring Harbor Laboratory Press, New York
Book chapter
Website
Macdonald SJ
Genotyping by Oligonucleotide Ligation Assay (OLA)
Cold Spring Harbor Protocols 2007; doi:10.1101/pdb.prot4843
Online protocol
Website
Macdonald SJ, Long AD
Joint estimates of quantitative trait locus effect and frequency using synthetic recombinant populations
of Drosophila melanogaster
Genetics 2007; 176(2):1261-81
PDF
| Journal
| Issue Highlights
| PubMed
| Sequences
| Data
Long AD, Beldade P, Macdonald SJ
Estimation of population heterozygosity and library construction induced
mutation rate from expressed sequence tag collections
Genetics 2007; 176(1):711-4
PDF
| Journal
| PubMed
Gruber JD, Genissel A, Macdonald SJ, Long AD
How repeatable are associations between polymorphisms in achaete-scute and
bristle number variation in Drosophila?
Genetics 2007; 175(4):1987-97
PDF
| Journal
| Issue Highlights
| PubMed
| Faculty of 1000
2006
Macdonald SJ, Long AD
Fine scale structural variants distinguish the genomes of Drosophila
melanogaster and D. pseudoobscura
Genome Biol. 2006; 7(7):R67
PDF | Journal
| Supporting
Info
| PubMed
| Data
2005
Macdonald SJ, Pastinen T, Genissel A, Cornforth TW, Long AD
A low-cost open-source SNP genotyping platform for association mapping
applications
Genome Biol. 2005; 6(12):R105
PDF | Journal
| Supporting
Info
| PubMed
| Sequences
| Data | Website
Macdonald SJ,
Pastinen T, Long AD
The effect of polymorphisms in the enhancer of split gene complex on
bristle number variation in a large wild-caught cohort of Drosophila
melanogaster
Genetics 2005; 171(4):1741-56
PDF | Journal
| Supporting Info | PubMed
| Data
Macdonald SJ,
Long AD
Prospects for identifying functional variation across the genome
Proc. Natl. Acad. Sci. USA 2005; 102(Suppl):6614-21
PDF | Journal
| Supporting
Info | PubMed
| Sequences
| Data
Macdonald SJ, Long AD
Identifying signatures of selection at the enhancer of split neurogenic
gene complex in Drosophila
Mol. Biol. Evol. 2005; 22(3):607-19
PDF | Journal
| PubMed
| Sequences
| Data
2004
Macdonald
SJ, Long AD
A potential regulatory polymorphism upstream of hairy is not associated
with bristle number variation in wild-caught Drosophila
Genetics 2004; 167(4):2127-31
PDF | Journal
| PubMed
| Sequences
| Data
| Faculty of 1000
2003
Weale ME, Depondt C, Macdonald SJ, Smith A, Lai PS, Shorvon
SD, Wood NW, Goldstein DB
Selection and evaluation of tagging SNPs in the neuronal-sodium-channel
gene SCN1A: implications for linkage-disequilibrium gene mapping.
Am. J. Hum. Genet. 2003; 73(3):551-65
PDF | Journal
| PubMed
2002
Pletcher SD, Macdonald SJ, Marguerie R, Certa U, Stearns SC,
Goldstein DB,Partridge L
Genome-wide transcript profiles in aging and calorically restricted
Drosophila melanogaster
Curr. Biol. 2002; 12(9):712-23
PDF
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| PubMed
Macdonald SJ
Wing shape in the Drosophila simulans species complex
Drosophila Information Service 2002; 85:31-4
Not peer reviewed
PDF
| Journal
1999
Colson I, Macdonald SJ, Goldstein DB
Microsatellite markers for interspecific mapping of Drosophila simulans
and D. sechellia
Mol. Ecol. 1999; 8(11):1951-5
PDF | Journal
| PubMed
Macdonald SJ, Goldstein DB
A quantitative genetic analysis of male sexual traits distinguishing
the sibling species Drosophila simulans and D. sechellia
Genetics 1999; 153(4):1683-99
PDF | Journal
| PubMed
| Data